PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00213.1.g00200.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 337aa    MW: 35659.1 Da    PI: 6.7506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00213.1.g00200.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17196243555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zpz_sc00213.1.g00200.1.sm.mk 196 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 243
                                   9*****.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.022193251IPR001471AP2/ERF domain
PRINTSPR003673.5E-7194205IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21195252IPR016177DNA-binding domain
SMARTSM003808.9E-31196257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-27196252IPR001471AP2/ERF domain
CDDcd000183.66E-14196253No hitNo description
PfamPF008473.2E-12196243IPR001471AP2/ERF domain
PRINTSPR003673.5E-7217233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEPHFGNGLY NGNAAYAREG QPLEQGYSPY SFTSYDGTSY SYNTASAGTG VFQPSSVCAA  60
PQPYGGSGYN HQSSLAAWVS SSSSSSFTTH HHFYQQQLHF GGGIDEYYGG QVEKAMGTVD  120
MEHVNAIMGA ASISTATTSG SSASRTYAPA SCWTMEHHGK TFTASHSPSA AIIHANAIDG  180
SSGSGGGGGD EAPLIGVRKR PWGKYAAEIR DSTRNGERVW IGTFDTPEAA ALAYDQAAYS  240
MRGPGAVLNF PVQHVQETLR DLGLSGGAAA GDSPVLELKR RHCIRRRLPK TKKAAGGQQT  300
TVTSRGHGKQ KQAASCVLEL EDLGPEYLDE LLAQSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22196253562ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278292KRRHCIRRRLPKTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459509.13e-91hypothetical protein SORBIDRAFT_02g005840
TrEMBLC5XCK53e-91C5XCK5_SORBI; Putative uncharacterized protein Sb02g005840
STRINGSb02g005840.19e-91(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-31ethylene response factor 1